PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1017
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 447aa    MW: 49407.4 Da    PI: 9.6116
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1017genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012828323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C++C+k F r  nL+ H r H
  Gh_D09G1017  8 CEICNKGFQRDQNLQLHRRGH 28
                 *******************88 PP

2zf-C2H212.10.0006282104123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H + +
  Gh_D09G1017  82 WKCEKCSKKYAVQSDWKAHSKIC 104
                  58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.93E-7528No hitNo description
SMARTSM003550.11628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.824628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551004777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.93E-777102No hitNo description
SMARTSM0035514082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MATNRFLCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK EVRKKVYICP EKTCVHHDPS  60
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKICGTREYR CDCGTLFSRK  120
DSFITHRAFC DALAEESGRF TSVSTTTMNP SAFTNDLTHI GGADNYETGF RPEFAAGSEL  180
VDSGLQKPRL QLWLDQANSQ LNPIGIQSNA NAFLAPKSTS LPELGIAAAP MNMFGSLSQS  240
QQWLSQYPQA SFPGANLSMS SVLQRGPKQE ENMGDLSESI TSLYSNNTRN SLRQNHTHMS  300
ATALLQKAAQ TGSTRSNPAI TNSGLFGLMS SPASTIPSPI NDHNKNEAYY KLFKQANQSE  360
NINEVVSSLP STQAAIIKDG SFVNNASMKA NERQGGQAVA SKLNTNANEV EASLTRDFLG  420
VGSESSRPFF QQEFAKFASM GSVQPWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13244KLKQRTNKEVRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5775691e-100JX577569.1 Gossypium hirsutum clone NBRI_GE9421 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485236.10.0PREDICTED: protein indeterminate-domain 9
SwissprotQ944L31e-104IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLA0A0D2RUM30.0A0A0D2RUM3_G
STRINGVIT_06s0004g03070.t011e-173(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-92C2H2-like zinc finger protein